TSS: Hg 102209.1: Difference between revisions
From referenceTSS
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|CD30LG= | |CD30LG= | ||
|TNLG3A= | |TNLG3A= | ||
|all_trans=LF355052:-11 MA590629:-11 LF355051:61 MA590628:61 LF355053:-173 MA590630:-173 LF355050:189 MA590627:189 LF355054:-237 MA590631:-237 LF355049:267 MA590626:267 LF355048:381 MA590625:381 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=-11 | ||
|distance_to_tss=-90419 | |distance_to_tss=-90419 | ||
|end=115021020 | |end=115021020 | ||
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|entrez_id=944 | |entrez_id=944 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=CD153 | |gene_alias=CD153{{!}}CD30L{{!}}CD30LG{{!}}TNLG3A | ||
|gene_description= | |gene_description=TNF superfamily member 8 | ||
|gene_name=TNFSF8 | |gene_name=TNFSF8 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 19: | Line 20: | ||
|nearest_refseq=NM_001244 | |nearest_refseq=NM_001244 | ||
|nearest_unigene=Hs.494901 | |nearest_unigene=Hs.494901 | ||
|num_trans= | |num_trans=14 | ||
|species=human | |species=human | ||
|start=115021008 | |start=115021008 | ||
|start_of_center_position=115021014 | |start_of_center_position=115021014 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF355052 MA590629 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102209.1 | |tss_id=hg_102209.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:58, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -90419 |
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| Nearest PromoterID: | NM_001252290 |
| Entrez ID: | 944 |
| Nearest Unigene: | Hs.494901 |
| Nearest Refseq: | NM_001244 |
| Nearest Ensembl: | ENSG00000106952 |
| Gene Name: | TNFSF8 |
| Gene Alias: | CD153|CD30L|CD30LG|TNLG3A |
| Gene Description: | TNF superfamily member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |