TSS: Hg 102214.1: Difference between revisions
From referenceTSS
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|TN= | |TN= | ||
|TN-C= | |TN-C= | ||
|all_trans=LF355059:-399 MA590636:-399 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=-399 | ||
|distance_to_tss= | |distance_to_tss=89123 | ||
|end=115029035 | |end=115029035 | ||
|end_of_center_position=115029035 | |end_of_center_position=115029035 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
|gene_alias=150-225 | |gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C | ||
|gene_description=tenascin C | |gene_description=tenascin C | ||
|gene_name=TNC | |gene_name=TNC | ||
| Line 23: | Line 24: | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=115029033 | |start=115029033 | ||
|start_of_center_position=115029034 | |start_of_center_position=115029034 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=23(GTGTTTAAAGGG,-,0.00) | ||
|transcript_name= | |transcript_name=LF355059 MA590636 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102214.1 | |tss_id=hg_102214.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:58, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 89123 |
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| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | TNC |
| Gene Alias: | 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 23(GTGTTTAAAGGG,-,0.00) |