TSS: Hg 100452.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=807 |entrez_id=51510 |gc_percent=0.472637 |gene_alias=C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60 |gene_description=charged mul...") |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CGI-34= | |||
|HSPC177= | |||
|PNAS-2= | |||
|SNF7DC2= | |||
|Vps60= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=637 | |||
|end=33265691 | |||
|end_of_center_position=33265687 | |||
|entrez_id=51510 | |entrez_id=51510 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
|gene_alias=C9orf83 | |gene_alias=C9orf83{{!}}CGI-34{{!}}HSPC177{{!}}PNAS-2{{!}}SNF7DC2{{!}}Vps60 | ||
|gene_description=charged multivesicular body protein 5 | |gene_description=charged multivesicular body protein 5 | ||
|gene_name=CHMP5 | |gene_name=CHMP5 | ||
Line 12: | Line 21: | ||
|nearest_refseq=NM_016410 | |nearest_refseq=NM_016410 | ||
|nearest_unigene=Hs.635313 | |nearest_unigene=Hs.635313 | ||
|num_trans=0 | |||
|species=human | |||
|start=33265681 | |||
|start_of_center_position=33265686 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_100452.1 | |tss_id=hg_100452.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:17, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 637 |
---|---|
Nearest PromoterID: | NM_016410 |
Entrez ID: | 51510 |
Nearest Unigene: | Hs.635313 |
Nearest Refseq: | NM_016410 |
Nearest Ensembl: | ENSG00000086065 |
Gene Name: | CHMP5 |
Gene Alias: | C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60 |
Gene Description: | charged multivesicular body protein 5 |
Gene Type: | protein-coding |
CpG%: | 0.005 |
GC%: | 0.472637 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |