TSS: Mm 43158.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:1920646 | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-78871 | ||
|end=125928779 | |end=125928779 | ||
|end_of_center_position=125928773 | |end_of_center_position=125928773 | ||
|entrez_id= | |entrez_id=231736 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias= | |gene_alias=EG231736 | ||
|gene_description= | |gene_description=predicted gene 4868 | ||
|gene_id=73396 | |gene_id=73396 | ||
|gene_name=RIKEN cDNA 1700048F04 gene | |gene_name=RIKEN cDNA 1700048F04 gene | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1920646 | |hgnc_mgi_id=MGI:1920646 | ||
|mKIAA1786= | |mKIAA1786= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001370875 | ||
|nearest_refseq= | |nearest_refseq=NM_001370875 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans= | |num_trans=73396 | ||
|species=mouse | |species=mouse | ||
|start=125928765 | |start=125928765 | ||
|start_of_center_position=125928772 | |start_of_center_position=125928772 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000199057 | |transcript_name=ENSMUST00000199057.1 AK006725 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_43158.1 | |tss_id=mm_43158.1 | ||
Latest revision as of 22:47, 27 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -78871 |
|---|---|
| Nearest PromoterID: | NM_001370875 |
| Entrez ID: | 231736 |
| Nearest Unigene: | |
| Nearest Refseq: | NM_001370875 |
| Nearest Ensembl: | |
| Gene Name: | RIKEN cDNA 1700048F04 gene |
| Gene Alias: | EG231736 |
| Gene Description: | predicted gene 4868 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.