TSS: Hg 189986.1: Difference between revisions

Latest revision as of 02:49, 17 June 2021

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

TATA-Box annotation

Distance to TSS:	89278
Nearest PromoterID:	NM_001136016
Entrez ID:	351
Nearest Unigene:	Hs.434980
Nearest Refseq:	NM_000484
Nearest Ensembl:	ENSG00000142192
Gene Name:	APP
Gene Alias:	AAA\|ABETA\|ABPP\|AD1\|APPI\|CTFgamma\|CVAP\|PN-II\|PN2\|preA4
Gene Description:	amyloid beta precursor protein
Gene Type:	protein-coding
CpG%:	0.03
GC%:	0.512438
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

@@ Line 8: / Line 8: @@
 |PN-II=
 |PN2=
-|all_trans=BC018937:-23 ENST00000415997.1:67 uc061zht.1:67 ENST00000491395.5:81 uc061zhu.1:81
+|all_trans=LF339768:27 MA575345:27 ENST00000415997.1:67 ENST00000491395.5:81
 |chr=chr21
 |cpg_percent=0.03
-|distance=-23
+|distance=27
 |distance_to_tss=89278
 |end=26051126
@@ Line 17: / Line 17: @@
 |entrez_id=351
 |gc_percent=0.512438
-|gene_alias=AAA
+|gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4
 |gene_description=amyloid beta precursor protein
 |gene_name=APP
@@ Line 25: / Line 25: @@
 |nearest_refseq=NM_000484
 |nearest_unigene=Hs.434980
-|num_trans=5
+|num_trans=4
 |species=human
 |start=26051098
 |start_of_center_position=26051112
 |strand=-
-|transcript_name=BC018937
+|transcript_name=LF339768 MA575345
 |tss_classification=yes
 |tss_id=hg_189986.1
 |tss_score=1
 }}