TSS: Mm 108556.1: Difference between revisions
From referenceTSS
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|Hox-10= | |Hox-10= | ||
|Hox10= | |Hox10= | ||
|all_trans= | |all_trans=MGI:88401 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 11: | Line 11: | ||
|entrez_id=12677 | |entrez_id=12677 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=Chx10 | |gene_alias=Chx10{{!}}Hox-10{{!}}Hox10{{!}}or | ||
|gene_description=visual system homeobox 2 | |gene_description=visual system homeobox 2 | ||
|gene_id=12677 | |gene_id=12677 | ||
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|hgnc_mgi_id=MGI:88401 | |hgnc_mgi_id=MGI:88401 | ||
|nearest_ensembl=ENSMUSG00000021239 | |nearest_ensembl=ENSMUSG00000021239 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001301427 | ||
|nearest_refseq=NM_007701 | |nearest_refseq=NM_007701 | ||
|nearest_unigene=Mm.4405 | |nearest_unigene=Mm.4405 | ||
|num_trans= | |num_trans=12677 | ||
|or= | |or= | ||
|species=mouse | |species=mouse | ||
| Line 30: | Line 30: | ||
|start_of_center_position=84569828 | |start_of_center_position=84569828 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=AK143461 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_108556.1 | |tss_id=mm_108556.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=Q80WF9 | ||
}} | }} | ||
Latest revision as of 13:36, 26 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
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| Nearest PromoterID: | NM_001301427 |
| Entrez ID: | 12677 |
| Nearest Unigene: | Mm.4405 |
| Nearest Refseq: | NM_007701 |
| Nearest Ensembl: | ENSMUSG00000021239 |
| Gene Name: | visual system homeobox 2 |
| Gene Alias: | Chx10|Hox-10|Hox10|or |
| Gene Description: | visual system homeobox 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.