TSS: Mm 60329.1: Difference between revisions

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{{TSSDetail
{{TSSDetail
|all_trans=ENSMUST00000144905.2:0 ENSMUST00000146155.7:0 ENSMUST00000107949.7:0 ENSMUST00000084937.10:0 ENSMUST00000107950.8:0 ENSMUST00000107948.7:0 uc009gox.2:0 AK053743:0 AK169836:0 AK049154:0 AK010334:0 AK169796:0 AK172418:0 AK162303:0 BC016099:0 ENSMUST00000136210.2:1 ENSMUST00000187524.6:3 ENSMUST00000125318.2:-4 ENSMUST00000138978.7:4 AK165177:-4 ENSMUST00000188476.6:12 ENSMUST00000187581.6:22 ENSMUST00000185481.6:-24 ENSMUST00000188111.6:-43 ENSMUST00000137702.7:-50 ENSMUST00000137742.7:-52 uc009gos.2:-52 AK036099:-52 ENSMUST00000055858.13:-56 NM_025880:-56 uc009gou.2:-56 uc009got.2:-56 uc009gov.2:-56 AK169789:-56 ENSMUST00000145653.7:435
|all_trans=MGI:1914226
|chr=chr7
|chr=chr7
|cpg_percent=0.115
|cpg_percent=0.115
Line 22: Line 22:
|nearest_refseq=NM_025880
|nearest_refseq=NM_025880
|nearest_unigene=Mm.274492
|nearest_unigene=Mm.274492
|num_trans=35
|num_trans=668661
|species=mouse
|species=mouse
|start=44246777
|start=44246777
|start_of_center_position=44246786
|start_of_center_position=44246786
|strand=+
|strand=+
|tata_box="-33(CGCTATAAATGG,-,0.00)"
|tata_box=-33(CGCTATAAATGG,-,0.00)
|transcript_name=ENSMUST00000144905.2 ENSMUST00000146155.7 ENSMUST00000107949.7 ENSMUST00000084937.10 ENSMUST00000107950.8 ENSMUST00000107948.7 uc009gox.2 AK053743 AK169836 AK049154 AK010334 AK169796 AK172418 AK162303 BC016099
|transcript_name=ENSMUST00000144905.2 ENSMUST00000146155.7 ENSMUST00000107949.7 ENSMUST00000084937.10 ENSMUST00000107950.8 ENSMUST00000107948.7 AK169836 AK049154 AK010334 AK169796 AK172418 AK162303 BC016099
|tss_classification=yes
|tss_classification=yes
|tss_id=mm_60329.1
|tss_id=mm_60329.1

Latest revision as of 05:07, 28 July 2021

Basic information about the TSS

TSS ID:mm_60329.1
Species:mouse
Chr:chr7
Start:44246777
End:44246796
Strand:+
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 5)



Gene and protein annotation

Transcript_name:ENSMUST00000144905.2 ENSMUST00000146155.7 ENSMUST00000107949.7 ENSMUST00000084937.10 ENSMUST00000107950.8 ENSMUST00000107948.7 AK169836 AK049154 AK010334 AK169796 AK172418 AK162303 BC016099
Distance:0
GeneID:668661
HGNC/MGI_ID:MGI:1914226
UniProt_ID:D3Z520 Q3T9M2 Q3TE80
Gene_name:RIKEN cDNA 2410002F23 gene
Gene_symbol:2410002F23Rik
Gene_synonyms:
Gene_source:MGI:1914226



TATA-Box annotation

Distance to TSS:65
Nearest PromoterID:NM_025880
Entrez ID:668661
Nearest Unigene:Mm.274492
Nearest Refseq:NM_025880
Nearest Ensembl:ENSMUSG00000045411
Gene Name:RIKEN cDNA 2410002F23 gene
Gene Alias:-
Gene Description:RIKEN cDNA 2410002F23 gene
Gene Type:protein-coding
CpG%:0.115
GC%:0.691542
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-33(CGCTATAAATGG,-,0.00)



TSS expression

Expression data not found.

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