TSS: Mm 123243.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|Nup58= | |Nup58= | ||
|all_trans= | |all_trans=MGI:1919094 MGI:6121524 | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=69 | ||
|end=60251445 | |end=60251445 | ||
|end_of_center_position=60251411 | |end_of_center_position=60251411 | ||
|entrez_id=71844 | |entrez_id=71844 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=1700017F11Rik | |gene_alias=1700017F11Rik{{!}}Nup58{{!}}mKIAA0410 | ||
|gene_description=nucleoporin like 1 | |gene_description=nucleoporin like 1 | ||
|gene_id=71844 | |gene_id=71844 | ||
|gene_name=nucleoporin like 1 | |gene_name=nucleoporin like 1; predicted gene, 49336 | ||
|gene_source=MGI:1919094 | |gene_source=MGI:1919094 MGI:6121524 | ||
|gene_symbol=Nupl1 | |gene_symbol=Gm49336 Nupl1 | ||
|gene_synonyms=1700017F11Rik | |gene_synonyms=1700017F11Rik | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1919094 | |hgnc_mgi_id=MGI:1919094 MGI:6121524 | ||
|mKIAA0410= | |mKIAA0410= | ||
|nearest_ensembl= | |nearest_ensembl=ENSMUSG00000114797 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001362439 | ||
|nearest_refseq=NM_170591 | |nearest_refseq=NM_170591 | ||
|nearest_unigene=Mm.258051 | |nearest_unigene=Mm.258051 | ||
|num_trans= | |num_trans=71844 | ||
|species=mouse | |species=mouse | ||
|start=60251375 | |start=60251375 | ||
|start_of_center_position=60251410 | |start_of_center_position=60251410 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=ENSMUST00000225805.1 ENSMUST00000225111.1 ENSMUST00000225572.1 AK078279 AK129134 AK146477 BC026743 AK133721 AK086412 AK163792 | ||
|tss_classification= | |tss_classification=no | ||
|tss_id=mm_123243.1 | |tss_id=mm_123243.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3UZQ6 Q6ZQC2 Q8R332 | |uniprot_id=Q3UZQ6 Q6ZQC2 Q8R332 | ||
}} | }} | ||
Latest revision as of 18:58, 26 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 69 |
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| Nearest PromoterID: | NM_001362439 |
| Entrez ID: | 71844 |
| Nearest Unigene: | Mm.258051 |
| Nearest Refseq: | NM_170591 |
| Nearest Ensembl: | ENSMUSG00000114797 |
| Gene Name: | nucleoporin like 1; predicted gene, 49336 |
| Gene Alias: | 1700017F11Rik|Nup58|mKIAA0410 |
| Gene Description: | nucleoporin like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.