TSS: Hg 100602.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=HGNC:25909 | |||
|chr=chr9 | |||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance_to_tss= | |distance=0 | ||
|distance_to_tss=-4 | |||
|end=35665229 | |||
|end_of_center_position=35665199 | |||
|entrez_id=84904 | |entrez_id=84904 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=C9orf100 | |gene_alias=C9orf100 | ||
|gene_description=Rho guanine nucleotide exchange factor 39 | |gene_description=Rho guanine nucleotide exchange factor 39 | ||
|gene_name=ARHGEF39 | |gene_id=84904 | ||
|gene_name=Rho guanine nucleotide exchange factor 39 | |||
|gene_source=HGNC:25909 | |||
|gene_symbol=ARHGEF39 | |||
|gene_synonyms=FLJ14642 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25909 | |||
|nearest_ensembl=ENSG00000137135 | |nearest_ensembl=ENSG00000137135 | ||
|nearest_promoter_id=NM_032818 | |nearest_promoter_id=NM_032818 | ||
|nearest_refseq=NM_032818 | |nearest_refseq=NM_032818 | ||
|nearest_unigene=Hs.534579 | |nearest_unigene=Hs.534579 | ||
|num_trans=84904 | |||
|species=human | |||
|start=35665168 | |||
|start_of_center_position=35665198 | |||
|strand=- | |||
|transcript_name=ENST00000475323.5 ENST00000378387.4 ENST00000490970.5 AK027548 AK225501 AK225529 BC033666 AK303513 | |||
|tss_classification=yes | |||
|tss_id=hg_100602.1 | |tss_id=hg_100602.1 | ||
|tss_score=1 | |||
|uniprot_id=B4E0T1 Q8N4T4 | |||
}} | }} | ||
Latest revision as of 17:47, 19 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -4 |
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| Nearest PromoterID: | NM_032818 |
| Entrez ID: | 84904 |
| Nearest Unigene: | Hs.534579 |
| Nearest Refseq: | NM_032818 |
| Nearest Ensembl: | ENSG00000137135 |
| Gene Name: | Rho guanine nucleotide exchange factor 39 |
| Gene Alias: | C9orf100 |
| Gene Description: | Rho guanine nucleotide exchange factor 39 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.