TSS: Hg 100611.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=5778 |entrez_id=7169 |gc_percent=0.502488 |gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB |gene_description=tropomyosin 2 (beta)...") |
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{{TSSDetail | {{TSSDetail | ||
|DA1= | |||
|DA2B= | |||
|DA2B4= | |||
|HEL-S-273= | |||
|NEM4= | |||
|TMSB= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=5647 | |||
|end=35684280 | |||
|end_of_center_position=35684278 | |||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=AMCD1 | |gene_alias=AMCD1{{!}}DA1{{!}}DA2B{{!}}DA2B4{{!}}HEL-S-273{{!}}NEM4{{!}}TMSB | ||
|gene_description=tropomyosin 2 | |gene_description=tropomyosin 2 | ||
|gene_name=TPM2 | |gene_name=TPM2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001301226 | ||
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=35684275 | |||
|start_of_center_position=35684277 | |||
|strand=- | |||
|tata_box=42(GCCTTTATAAGT,-,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100611.1 | |tss_id=hg_100611.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:21, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5647 |
|---|---|
| Nearest PromoterID: | NM_001301226 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | TPM2 |
| Gene Alias: | AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB |
| Gene Description: | tropomyosin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 42(GCCTTTATAAGT,-,0.00) |