TSS: Mm 80081.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |distance=NA | ||
|distance_to_tss=7709 | |distance_to_tss=7709 | ||
|end=70020263 | |end=70020263 | ||
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|entrez_id=235459 | |entrez_id=235459 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=TFIIA-gamma | |gene_alias=TFIIA-gamma{{!}}TfIIg{{!}}Tfiia2 | ||
|gene_description= | |gene_description=general transcription factor II A, 2 | ||
|gene_name=Gtf2a2 | |gene_name=Gtf2a2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000033543 | |nearest_ensembl=ENSMUSG00000033543 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001282084 | ||
|nearest_refseq=NM_199151 | |nearest_refseq=NM_199151 | ||
|nearest_unigene=Mm.293117 | |nearest_unigene=Mm.293117 | ||
| Line 23: | Line 23: | ||
|start_of_center_position=70020257 | |start_of_center_position=70020257 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-54(GTTTTTAAAGAA,+,0.00),-32(GAGTATAAAAGA,-,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 20:35, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 7709 |
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| Nearest PromoterID: | NM_001282084 |
| Entrez ID: | 235459 |
| Nearest Unigene: | Mm.293117 |
| Nearest Refseq: | NM_199151 |
| Nearest Ensembl: | ENSMUSG00000033543 |
| Gene Name: | Gtf2a2 |
| Gene Alias: | TFIIA-gamma|TfIIg|Tfiia2 |
| Gene Description: | general transcription factor II A, 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -54(GTTTTTAAAGAA,+,0.00),-32(GAGTATAAAAGA,-,0.00) |