TSS: Mm 144120.1: Difference between revisions
From referenceTSS
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|Gm328= | |Gm328= | ||
|Jcad= | |Jcad= | ||
|all_trans= | |all_trans=NM_001081963:0 AK142315:0 ENSMUST00000234494.1:-35 ENSMUST00000037029.6:-35 AK043736:56 | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
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|entrez_id=240185 | |entrez_id=240185 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=1110056P05Rik | |gene_alias=1110056P05Rik{{!}}9430020K01Rik{{!}}Gm328{{!}}mKIAA1462 | ||
|gene_description= | |gene_description=junctional cadherin 5 associated | ||
|gene_id=240185 | |gene_id=240185 | ||
|gene_name= | |gene_name=junctional cadherin 5 associated | ||
|gene_source=MGI:2685174 | |gene_source=MGI:2685174 | ||
|gene_symbol= | |gene_symbol=Jcad | ||
|gene_synonyms= | |gene_synonyms=9430020K01Rik | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2685174 | |hgnc_mgi_id=MGI:2685174 | ||
| Line 30: | Line 30: | ||
|start_of_center_position=4634943 | |start_of_center_position=4634943 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=NM_001081963 AK142315 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_144120.1 | |tss_id=mm_144120.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=Q5DTX6 | ||
}} | }} | ||
Revision as of 09:19, 20 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14 |
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| Nearest PromoterID: | NM_001081963 |
| Entrez ID: | 240185 |
| Nearest Unigene: | Mm.33179 |
| Nearest Refseq: | NM_001081963 |
| Nearest Ensembl: | ENSMUSG00000033960 |
| Gene Name: | junctional cadherin 5 associated |
| Gene Alias: | 1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462 |
| Gene Description: | junctional cadherin 5 associated |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.