TSS: Mm 152985.1: Difference between revisions
From referenceTSS
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|C130057E09Rik= | |C130057E09Rik= | ||
|Kiaa1432= | |Kiaa1432= | ||
|all_trans=ENSMUST00000180986.7 | |all_trans=ENSMUST00000180986.7:8 AK020826:8 AK132712:133 | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
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|entrez_id=226089 | |entrez_id=226089 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=C030046E11Rik | |gene_alias=C030046E11Rik{{!}}C130057E09Rik{{!}}Kiaa1432 | ||
|gene_description=RAB6A GEF complex partner 1 | |gene_description=RAB6A GEF complex partner 1 | ||
|gene_id=77779 | |gene_id=77779 | ||
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|nearest_refseq=NM_177641 | |nearest_refseq=NM_177641 | ||
|nearest_unigene=Mm.353838 | |nearest_unigene=Mm.353838 | ||
|num_trans= | |num_trans=3 | ||
|species=mouse | |species=mouse | ||
|start=29523166 | |start=29523166 | ||
|start_of_center_position=29523170 | |start_of_center_position=29523170 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-75(AACCTTTAAAGC,-,0.00),-73(CCTTTAAAGCAG,+,0.00) | ||
|transcript_name=ENSMUST00000180986.7 | |transcript_name=ENSMUST00000180986.7 AK020826 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_152985.1 | |tss_id=mm_152985.1 | ||
Revision as of 12:45, 20 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 889 |
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| Nearest PromoterID: | NM_001081319 |
| Entrez ID: | 226089 |
| Nearest Unigene: | Mm.353838 |
| Nearest Refseq: | NM_177641 |
| Nearest Ensembl: | ENSMUSG00000038658 |
| Gene Name: | RIKEN cDNA A930007I19 gene |
| Gene Alias: | C030046E11Rik|C130057E09Rik|Kiaa1432 |
| Gene Description: | RAB6A GEF complex partner 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -75(AACCTTTAAAGC,-,0.00),-73(CCTTTAAAGCAG,+,0.00) |
TSS expression
Expression data not found.