TSS: Hg 10070.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-340 |entrez_id=23261 |gc_percent=0.711443 |gene_alias=CANPMR |gene_description=calmodulin binding transcription activator 1 |g...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000442889.1:133 uc057bwq.1:133 | |||
|chr=chr1 | |||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=133 | |||
|distance_to_tss=-340 | |distance_to_tss=-340 | ||
|end=6784993 | |||
|entrez_id=23261 | |entrez_id=23261 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_015215 | |nearest_refseq=NM_015215 | ||
|nearest_unigene=Hs.397705 | |nearest_unigene=Hs.397705 | ||
|num_trans=2 | |||
|species=human | |||
|start=6784975 | |||
|strand=- | |||
|transcript_name=ENST00000442889.1 uc057bwq.1 | |||
|tss_classification=yes | |||
|tss_id=hg_10070.1 | |tss_id=hg_10070.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:14, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -340 |
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| Nearest PromoterID: | NM_015215 |
| Entrez ID: | 23261 |
| Nearest Unigene: | Hs.397705 |
| Nearest Refseq: | NM_015215 |
| Nearest Ensembl: | ENSG00000171735 |
| Gene Name: | CAMTA1 |
| Gene Alias: | CANPMR |
| Gene Description: | calmodulin binding transcription activator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |