TSS: Hg 100711.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=8701 |entrez_id=5079 |gc_percent=0.532338 |gene_alias=ALL3|BSAP |gene_description=paired box 5 |gene_name=PAX5 |gene_type=prote...") |
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{{TSSDetail | {{TSSDetail | ||
|BSAP= | |||
|chr=chr9 | |||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance= | |||
|distance_to_tss=8701 | |distance_to_tss=8701 | ||
|end=37025784 | |||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
|num_trans=0 | |||
|species=human | |||
|start=37025771 | |||
|strand=- | |||
|tata_box="-85(CCCTTTAAAAAA,-,0.00)" | |tata_box="-85(CCCTTTAAAAAA,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100711.1 | |tss_id=hg_100711.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:15, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 8701 |
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| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | PAX5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-85(CCCTTTAAAAAA,-,0.00)" |