TSS: Mm 11311.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|Tmem15= | |Tmem15= | ||
|all_trans=ENSMUST00000148969.7:3 ENSMUST00000064447.11:3 ENSMUST00000156023.7:23 ENSMUST00000138666.7:30 BC028665:30 ENSMUST00000113634.2:33 ENSMUST00000133603.1:35 AK052272:35 BC032090:38 BC096591:38 | |all_trans=LF193236:2 MA428813:2 ENSMUST00000148969.7:3 ENSMUST00000064447.11:3 LF259597:14 MA495174:14 NR_156132:22 NM_198304:22 ENSMUST00000156023.7:23 ENSMUST00000138666.7:30 BC028665:30 ENSMUST00000113634.2:33 ENSMUST00000133603.1:35 AK052272:35 BC032090:38 BC096591:38 AK129073:39 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance= | |distance=2 | ||
|distance_to_tss=- | |distance_to_tss=-27 | ||
|end=30286394 | |end=30286394 | ||
|end_of_center_position=30286389 | |end_of_center_position=30286389 | ||
|entrez_id= | |entrez_id=227699 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias= | |gene_alias=BC025526{{!}}U89435 | ||
|gene_description= | |gene_description=nucleoporin 188 | ||
|gene_id=227699 | |gene_id=227699 | ||
|gene_name= | |gene_name=Nup188 | ||
|gene_source=MGI:2446190 | |gene_source=MGI:2446190 | ||
|gene_symbol=Nup188 | |gene_symbol=Nup188 | ||
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|hgnc_mgi_id=MGI:2446190 | |hgnc_mgi_id=MGI:2446190 | ||
|mKIAA1094= | |mKIAA1094= | ||
|nearest_ensembl= | |nearest_ensembl=ENSMUSG00000052533 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_198304 | ||
|nearest_refseq= | |nearest_refseq=NM_198304 | ||
|nearest_unigene=Mm. | |nearest_unigene=Mm.330119 | ||
|num_trans= | |num_trans=17 | ||
|species=mouse | |species=mouse | ||
|start=30286383 | |start=30286383 | ||
|start_of_center_position=30286388 | |start_of_center_position=30286388 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=LF193236 MA428813 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_11311.1 | |tss_id=mm_11311.1 | ||
Latest revision as of 21:13, 19 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -27 |
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| Nearest PromoterID: | NM_198304 |
| Entrez ID: | 227699 |
| Nearest Unigene: | Mm.330119 |
| Nearest Refseq: | NM_198304 |
| Nearest Ensembl: | ENSMUSG00000052533 |
| Gene Name: | Nup188 |
| Gene Alias: | BC025526|U89435 |
| Gene Description: | nucleoporin 188 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.