TSS: Hg 236834.1: Difference between revisions
From referenceTSS
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| Line 3: | Line 3: | ||
|HK1= | |HK1= | ||
|PPT-C= | |PPT-C= | ||
|all_trans= | |all_trans=BC101607:-22 ENST00000307139.4:-24 BC101633:-24 ENST00000673855.1:-28 KJ893600:36 AF361351:36 AF458898:36 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=-22 | ||
|distance_to_tss=-11 | |distance_to_tss=-11 | ||
|end=49848028 | |end=49848028 | ||
| Line 12: | Line 12: | ||
|entrez_id=255061 | |entrez_id=255061 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=EK | |gene_alias=EK{{!}}HK-1{{!}}HK1{{!}}PPT-C | ||
|gene_description=tachykinin 4 | |gene_description=tachykinin 4 | ||
|gene_name= | |gene_id=27091 | ||
|gene_name=calcium voltage-gated channel auxiliary subunit gamma 5 | |||
|gene_source=HGNC:1409 | |||
|gene_symbol=CACNG5 | |||
|gene_synonyms= | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1409 | |||
|nearest_ensembl=ENSG00000176358 | |nearest_ensembl=ENSG00000176358 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001077506 | ||
|nearest_refseq=NM_170685 | |nearest_refseq=NM_170685 | ||
|nearest_unigene=Hs.652130 | |nearest_unigene=Hs.652130 | ||
|num_trans= | |num_trans=7 | ||
|species=human | |species=human | ||
|start=49848027 | |start=49848027 | ||
|start_of_center_position=66877296 | |start_of_center_position=66877296 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=BC101607 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236834.1 | |tss_id=hg_236834.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |||
}} | }} | ||
Revision as of 14:05, 17 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -11 |
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| Nearest PromoterID: | NM_001077506 |
| Entrez ID: | 255061 |
| Nearest Unigene: | Hs.652130 |
| Nearest Refseq: | NM_170685 |
| Nearest Ensembl: | ENSG00000176358 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit gamma 5 |
| Gene Alias: | EK|HK-1|HK1|PPT-C |
| Gene Description: | tachykinin 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.