TSS: Hg 111271.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=270 |entrez_id=79991 |gc_percent=0.567164 |gene_alias=AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 |gene_description="STN1, CST complex...") |
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{{TSSDetail | {{TSSDetail | ||
|AAF44= | |||
|OBFC1= | |||
|RPA-32= | |||
|all_trans=ENST00000466828.5:-98 uc057vtq.1:-98 ENST00000224950.7:-173 uc001kxm.4:-173 BC017400:-176 NM_024928:-255 ENST00000369764.1:333 uc001kxl.4:333 AK026212:333 HQ448216:408 KJ899603:408 | |||
|bA541N10.2= | |||
|chr=chr10 | |||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=-98 | |||
|distance_to_tss=270 | |distance_to_tss=270 | ||
|end=103918032 | |||
|entrez_id=79991 | |entrez_id=79991 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
|gene_alias=AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 | |gene_alias=AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 | ||
|gene_description="STN1, CST complex subunit" | |gene_description="STN1, CST complex subunit" | ||
|gene_name= | |gene_id=79991 | ||
|gene_name=oligonucleotide/oligosaccharide-binding fold containing 1 | |||
|gene_source=HGNC:26200 | |||
|gene_symbol=OBFC1 | |||
|gene_synonyms=FLJ22559 bA541N10.2 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26200 | |||
|nearest_ensembl=ENSG00000107960 | |nearest_ensembl=ENSG00000107960 | ||
|nearest_promoter_id=NM_024928 | |nearest_promoter_id=NM_024928 | ||
|nearest_refseq=NM_024928 | |nearest_refseq=NM_024928 | ||
|nearest_unigene=Hs.62314 | |nearest_unigene=Hs.62314 | ||
|num_trans=11 | |||
|species=human | |||
|start=103918001 | |||
|strand=- | |||
|transcript_name=ENST00000466828.5 uc057vtq.1 | |||
|tss_classification=yes | |||
|tss_id=hg_111271.1 | |tss_id=hg_111271.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 01:45, 9 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 270 |
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| Nearest PromoterID: | NM_024928 |
| Entrez ID: | 79991 |
| Nearest Unigene: | Hs.62314 |
| Nearest Refseq: | NM_024928 |
| Nearest Ensembl: | ENSG00000107960 |
| Gene Name: | oligonucleotide/oligosaccharide-binding fold containing 1 |
| Gene Alias: | AAF-44 |
| Gene Description: | "STN1, CST complex subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.