TSS: Hg 100946.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-238 |entrez_id=100507540 |gc_percent=0.527363 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1504 |gene...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=-238 | |distance_to_tss=-238 | ||
|end=72305209 | |||
|entrez_id=100507540 | |entrez_id=100507540 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_110952 | |nearest_refseq=NR_110952 | ||
|nearest_unigene=Hs.54957 | |nearest_unigene=Hs.54957 | ||
|num_trans=0 | |||
|species=human | |||
|start=72305186 | |||
|strand=- | |||
|tata_box="37(CCTTATCTACCC,+,0.00)" | |tata_box="37(CCTTATCTACCC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100946.1 | |tss_id=hg_100946.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:22, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -238 |
|---|---|
| Nearest PromoterID: | NR_110952 |
| Entrez ID: | 100507540 |
| Nearest Unigene: | Hs.54957 |
| Nearest Refseq: | NR_110952 |
| Nearest Ensembl: | ENSG00000225434 |
| Gene Name: | LINC01504 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1504 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "37(CCTTATCTACCC,+,0.00)" |