TSS: Mm 77582.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:3045379 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_040702 | |nearest_refseq=NR_040702 | ||
|nearest_unigene=Mm.246601 | |nearest_unigene=Mm.246601 | ||
|num_trans= | |num_trans=100042484 | ||
|species=mouse | |species=mouse | ||
|start=123754138 | |start=123754138 | ||
| Line 28: | Line 28: | ||
|strand=- | |strand=- | ||
|tata_box=-28(GCCTTTTAAAGG,-,0.00),-27(CCTTTTAAAGGC,+,0.00),-26(CTTTTAAAGGCG,+,0.00) | |tata_box=-28(GCCTTTTAAAGG,-,0.00),-27(CCTTTTAAAGGC,+,0.00),-26(CTTTTAAAGGCG,+,0.00) | ||
|transcript_name= | |transcript_name=AK076318 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_77582.1 | |tss_id=mm_77582.1 | ||
Latest revision as of 11:28, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 20191 |
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| Nearest PromoterID: | NR_040702 |
| Entrez ID: | 234863 |
| Nearest Unigene: | Mm.246601 |
| Nearest Refseq: | NR_040702 |
| Nearest Ensembl: | ENSMUSG00000110599 |
| Gene Name: | RIKEN cDNA 4732419C18 gene |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA 6030466F02 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -28(GCCTTTTAAAGG,-,0.00),-27(CCTTTTAAAGGC,+,0.00),-26(CTTTTAAAGGCG,+,0.00) |
TSS expression
Expression data not found.