TSS: Hg 101116.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=157136 |entrez_id=7088 |gc_percent=0.497512 |gene_alias=ESG|ESG1|GRG1 |gene_description=transducin like enhancer of split 1 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|ESG1= | |||
|GRG1= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=157136 | |distance_to_tss=157136 | ||
|end=81532401 | |||
|entrez_id=7088 | |entrez_id=7088 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_005077 | |nearest_refseq=NM_005077 | ||
|nearest_unigene=Hs.197320 | |nearest_unigene=Hs.197320 | ||
|num_trans=0 | |||
|species=human | |||
|start=81532397 | |||
|strand=- | |||
|tata_box="-34(GCCCATAAAAAG,-,0.00),-32(CCATAAAAAGAG,+,0.00)" | |tata_box="-34(GCCCATAAAAAG,-,0.00),-32(CCATAAAAAGAG,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101116.1 | |tss_id=hg_101116.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:29, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 157136 |
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| Nearest PromoterID: | NM_001303104 |
| Entrez ID: | 7088 |
| Nearest Unigene: | Hs.197320 |
| Nearest Refseq: | NM_005077 |
| Nearest Ensembl: | ENSG00000196781 |
| Gene Name: | TLE1 |
| Gene Alias: | ESG |
| Gene Description: | transducin like enhancer of split 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GCCCATAAAAAG,-,0.00),-32(CCATAAAAAGAG,+,0.00)" |