TSS: Mm 118360.1: Difference between revisions

Latest revision as of 17:12, 26 July 2021

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

Gene_name:	integrin alpha 1; predicted gene, 49395
Gene_symbol:	Gm49395 Itga1
Gene_synonyms:	CD49A E130012M19Rik Vla1
Gene_source:	MGI:6121627 MGI:96599

TATA-Box annotation

Distance to TSS:	233
Nearest PromoterID:	NM_001033228
Entrez ID:	109700
Nearest Unigene:	Mm.317280
Nearest Refseq:	NM_001033228
Nearest Ensembl:	ENSMUSG00000042284
Gene Name:	integrin alpha 1; predicted gene, 49395
Gene Alias:	CD49A\|E130012M19Rik\|Vla1
Gene Description:	integrin alpha 1
Gene Type:	protein-coding
CpG%:	0.07
GC%:	0.621891
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 2: / Line 2: @@
 |E130012M19Rik=
 |Vla1=
-|all_trans=ENSMUST00000224865.1:0 ENSMUST00000225093.1:0 AK137169:0 ENSMUST00000224541.1:8 AK165357:8 ENSMUST00000225486.1:9 AK171212:-76 BC014765:-82 ENSMUST00000224495.1:94 ENSMUST00000224493.1:-133 AK169964:-133 ENSMUST00000224119.1:-134 AK029105:-134 AK043769:-158 ENSMUST00000224997.1:-177 AK077286:-177 ENSMUST00000224268.1:-187 BC167237:187 AK141204:-187 ENSMUST00000061673.8:-220 NM_001033228:-220 AK035870:-220
+|all_trans=MGI:6121627 MGI:96599
 |chr=chr13
 |cpg_percent=0.07
@@ Line 24: / Line 24: @@
 |nearest_refseq=NM_001033228
 |nearest_unigene=Mm.317280
-|num_trans=22
+|num_trans=109700
 |species=mouse
 |start=115101717