TSS: Hg 101183.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=370458 |entrez_id=4915 |gc_percent=0.562189 |gene_alias=GP145-TrkB|TRKB|trk-B |gene_description=neurotrophic receptor tyrosine...") |
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{{TSSDetail | {{TSSDetail | ||
|TRKB= | |||
|chr=chr9 | |||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance= | |||
|distance_to_tss=370458 | |distance_to_tss=370458 | ||
|end=85040838 | |||
|entrez_id=4915 | |entrez_id=4915 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_006180 | |nearest_refseq=NM_006180 | ||
|nearest_unigene=Hs.494312 | |nearest_unigene=Hs.494312 | ||
|num_trans=0 | |||
|species=human | |||
|start=85040831 | |||
|strand=- | |||
|tata_box="-35(CTCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGAC,+,0.00)" | |tata_box="-35(CTCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGAC,+,0.00)" | ||
|transcript_name= | |||
|trk-B= | |||
|tss_classification=no | |||
|tss_id=hg_101183.1 | |tss_id=hg_101183.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:32, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 370458 |
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| Nearest PromoterID: | NM_001018064 |
| Entrez ID: | 4915 |
| Nearest Unigene: | Hs.494312 |
| Nearest Refseq: | NM_006180 |
| Nearest Ensembl: | ENSG00000148053 |
| Gene Name: | NTRK2 |
| Gene Alias: | GP145-TrkB |
| Gene Description: | neurotrophic receptor tyrosine kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(CTCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGAC,+,0.00)" |