TSS: Hg 114228.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=-53 |entrez_id=55709 |gc_percent=0.671642 |gene_alias=BKLHD4|HSPC252 |gene_description=kelch repeat and BTB domain containing 4 |...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HSPC252= | |||
|all_trans=ENST00000530295.5:0 ENST00000534208.5:0 ENST00000534716.2:0 ENST00000533105.1:0 uc058bgl.1:0 uc058bgm.1:0 uc010rhn.2:0 uc058bgn.1:0 BC000617:0 AK313802:0 AK223255:0 AF067139:0 AF100743:0 AK294167:0 DQ895121:1 DQ891934:1 KJ891680:1 KR710624:1 KR710625:1 KR710626:1 ENST00000528192.5:-7 uc058bgk.1:-7 ENST00000524568.1:9 uc058bgo.1:9 ENST00000529276.1:-18 uc058bgj.1:-18 ENST00000263774.8:-37 NM_004551:-37 uc001nga.3:-37 ENST00000531351.1:178 uc058bgp.1:178 | |||
|chr=chr11 | |||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |||
|distance_to_tss=-53 | |distance_to_tss=-53 | ||
|end=47579090 | |||
|entrez_id=55709 | |entrez_id=55709 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=BKLHD4|HSPC252 | |gene_alias=BKLHD4|HSPC252 | ||
|gene_description=kelch repeat and BTB domain containing 4 | |gene_description=kelch repeat and BTB domain containing 4 | ||
|gene_name= | |gene_id=4722 | ||
|gene_name=NADH:ubiquinone oxidoreductase core subunit S3 | |||
|gene_source=HGNC:7710 | |||
|gene_symbol=NDUFS3 | |||
|gene_synonyms=CI-30 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7710 | |||
|nearest_ensembl=ENSG00000123444 | |nearest_ensembl=ENSG00000123444 | ||
|nearest_promoter_id=NM_001318721 | |nearest_promoter_id=NM_001318721 | ||
|nearest_refseq=NM_016506 | |nearest_refseq=NM_016506 | ||
|nearest_unigene=Hs.718483 | |nearest_unigene=Hs.718483 | ||
|num_trans=31 | |||
|species=human | |||
|start=47579046 | |||
|strand=+ | |||
|transcript_name=ENST00000530295.5 ENST00000534208.5 ENST00000534716.2 ENST00000533105.1 uc058bgl.1 uc058bgm.1 uc010rhn.2 uc058bgn.1 BC000617 AK313802 AK223255 AF067139 AF100743 AK294167 | |||
|tss_classification=yes | |||
|tss_id=hg_114228.1 | |tss_id=hg_114228.1 | ||
|tss_score=1 | |||
|uniprot_id=E9PKL8 G3V194 O75489 Q53FM7 | |||
}} | }} | ||
Revision as of 03:51, 9 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -53 |
|---|---|
| Nearest PromoterID: | NM_001318721 |
| Entrez ID: | 55709 |
| Nearest Unigene: | Hs.718483 |
| Nearest Refseq: | NM_016506 |
| Nearest Ensembl: | ENSG00000123444 |
| Gene Name: | NADH:ubiquinone oxidoreductase core subunit S3 |
| Gene Alias: | BKLHD4 |
| Gene Description: | kelch repeat and BTB domain containing 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.