TSS: Hg 114584.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|PGL2= | |||
|SDH5= | |||
|all_trans=ENST00000542074.1:0 ENST00000536670.5:0 ENST00000623232.1:0 ENST00000534878.5:0 ENST00000538594.5:0 ENST00000359614.9:0 ENST00000537782.5:0 ENST00000544801.5:0 ENST00000536250.1:0 ENST00000544880.1:0 ENST00000543265.1:0 NM_017841:0 uc058ccr.1:0 uc058ccs.1:0 uc058cct.1:0 uc058ccu.1:0 uc058ccv.1:0 uc058ccw.1:0 uc058ccx.1:0 uc058ccy.1:0 uc058ccz.1:0 uc058cda.1:0 uc058cdb.1:0 BX648946:0 AK000494:0 BC002331:0 JF432739:0 KJ904784:0 ENST00000543044.2:2 uc058cdc.1:2 ENST00000301761.6:-28 uc001nrt.4:-28 ENST00000541135.5:-45 uc058ccq.1:-45 ENST00000542794.5:-59 uc058ccp.1:-59 | |||
|chr=chr11 | |||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |||
|distance_to_tss=-1 | |distance_to_tss=-1 | ||
|end=61430148 | |||
|entrez_id=54949 | |entrez_id=54949 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=C11orf79|PGL2|SDH5 | |gene_alias=C11orf79|PGL2|SDH5 | ||
|gene_description=succinate dehydrogenase complex assembly factor 2 | |gene_description=succinate dehydrogenase complex assembly factor 2 | ||
|gene_name=SDHAF2 | |gene_id=220004 54949 | ||
|gene_name=protein phosphatase 1 regulatory subunit 32; succinate dehydrogenase complex assembly factor 2 | |||
|gene_source=HGNC:26034 HGNC:28869 | |||
|gene_symbol=PPP1R32 SDHAF2 | |||
|gene_synonyms=FLJ20487 FLJ32771 IIIG9 SDH5 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26034 HGNC:28869 | |||
|nearest_ensembl=ENSG00000167985 | |nearest_ensembl=ENSG00000167985 | ||
|nearest_promoter_id=NM_017841 | |nearest_promoter_id=NM_017841 | ||
|nearest_refseq=NM_017841 | |nearest_refseq=NM_017841 | ||
|nearest_unigene=Hs.313247 | |nearest_unigene=Hs.313247 | ||
|num_trans=36 | |||
|species=human | |||
|start=61430100 | |||
|strand=+ | |||
|transcript_name=ENST00000542074.1 ENST00000536670.5 ENST00000623232.1 ENST00000534878.5 ENST00000538594.5 ENST00000359614.9 ENST00000537782.5 ENST00000544801.5 ENST00000536250.1 ENST00000544880.1 ENST00000543265.1 NM_017841 uc058ccr.1 uc058ccs.1 uc058cct.1 uc058ccu.1 uc058ccv.1 uc058ccw.1 uc058ccx.1 uc058ccy.1 uc058ccz.1 uc058cda.1 uc058cdb.1 BX648946 AK000494 BC002331 JF432739 KJ904784 | |||
|tss_classification=yes | |||
|tss_id=hg_114584.1 | |tss_id=hg_114584.1 | ||
|tss_score=1 | |||
|uniprot_id=F5GXW4 F5H4T4 F5H8E2 F8W679 M0QY91 M0QYN2 M0R060 Q9NX18 | |||
}} | }} | ||
Revision as of 04:06, 9 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
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| Nearest PromoterID: | NM_017841 |
| Entrez ID: | 54949 |
| Nearest Unigene: | Hs.313247 |
| Nearest Refseq: | NM_017841 |
| Nearest Ensembl: | ENSG00000167985 |
| Gene Name: | protein phosphatase 1 regulatory subunit 32; succinate dehydrogenase complex assembly factor 2 |
| Gene Alias: | C11orf79 |
| Gene Description: | succinate dehydrogenase complex assembly factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.