TSS: Hg 101268.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-33328 |entrez_id=286238 |gc_percent=0.467662 |gene_alias=- |gene_description=uncharacterized LOC286238 |gene_name=LOC286238 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=-33328 | |distance_to_tss=-33328 | ||
|end=88685490 | |||
|entrez_id=286238 | |entrez_id=286238 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
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|nearest_refseq=NM_001100111 | |nearest_refseq=NM_001100111 | ||
|nearest_unigene=Hs.434185 | |nearest_unigene=Hs.434185 | ||
|num_trans=0 | |||
|species=human | |||
|start=88685486 | |||
|strand=- | |||
|tata_box="-80(CTCTATAAAATG,-,0.00),-44(GGCCATATAAGG,-,0.00),-42(CCATATAAGGGA,+,0.00)" | |tata_box="-80(CTCTATAAAATG,-,0.00),-44(GGCCATATAAGG,-,0.00),-42(CCATATAAGGGA,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101268.1 | |tss_id=hg_101268.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 18:36, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -33328 |
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Nearest PromoterID: | NM_001100111 |
Entrez ID: | 286238 |
Nearest Unigene: | Hs.434185 |
Nearest Refseq: | NM_001100111 |
Nearest Ensembl: | ENSG00000228189 |
Gene Name: | LOC286238 |
Gene Alias: | - |
Gene Description: | uncharacterized LOC286238 |
Gene Type: | ncRNA |
CpG%: | 0.02 |
GC%: | 0.467662 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-80(CTCTATAAAATG,-,0.00),-44(GGCCATATAAGG,-,0.00),-42(CCATATAAGGGA,+,0.00)" |