TSS: Rfhg 43894.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000336686.8) |ccre_category=pELS |ccre_description=pELS (EH38D3414170,EH38E2192305) |chr=chr3 |cpg_percent=0.000000 |detailed_ann...")
 
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000336686.8)
|annotation=promoter-TSS (NM_001348307)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS (EH38D3414170,EH38E2192305)
|ccre_description=pELS (EH38D3414170,EH38E2192305)
|chr=chr3
|chr=chr3
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000336686.8)
|detailed_annotation=promoter-TSS (NM_001348307)
|distance=
|distance=
|distance_to_tss=149
|distance_to_tss=-96
|end=37174992
|end=37174992
|entrez_id=ENSG00000093167
|entrez_id=9209
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.461538
|gc_percent=0.461538
|gene_alias=
|gene_alias=HUFI-2
|gene_description=
|gene_description=LRR binding FLII interacting protein 2
|gene_id=
|gene_id=
|gene_name=
|gene_name=LRRFIP2
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=ENSG00000093167
|nearest_promoter_id=ENST00000434749.5
|nearest_promoter_id=NM_001348307
|nearest_refseq=
|nearest_refseq=NM_006309
|nearest_unigene=ENST00000336686
|nearest_unigene=Hs.740522
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=37174979
|start=37174980
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 14:15, 24 June 2023

Basic information about the TSS


TSS ID:rfhg_43894.1
Species:human
Chr:chr3
Start:37174980
End:37174992
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS (EH38D3414170,EH38E2192305)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LRRFIP2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-96
    Nearest PromoterID:NM_001348307
    Entrez ID:9209
    Nearest Unigene:Hs.740522
    Nearest Refseq:NM_006309
    Nearest Ensembl:ENSG00000093167
    Gene Name:LRRFIP2
    Gene Alias:HUFI-2
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.461538
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):