TSS: Hg 101533.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=112411 |entrez_id=100313780 |gc_percent=0.547264 |gene_alias=mir-2278 |gene_description=microRNA 2278 |gene_name=MIR2278 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance= | |||
|distance_to_tss=112411 | |distance_to_tss=112411 | ||
|end=94922377 | |||
|entrez_id=100313780 | |entrez_id=100313780 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_031755 | |nearest_refseq=NR_031755 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=0 | |||
|species=human | |||
|start=94922368 | |||
|strand=- | |||
|tata_box="-35(GGCCTTATAAAC,-,0.00),-33(CCTTATAAACAG,+,0.00)" | |tata_box="-35(GGCCTTATAAAC,-,0.00),-33(CCTTATAAACAG,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101533.1 | |tss_id=hg_101533.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:47, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 112411 |
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| Nearest PromoterID: | NR_031755 |
| Entrez ID: | 100313780 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_031755 |
| Nearest Ensembl: | ENSG00000252153 |
| Gene Name: | MIR2278 |
| Gene Alias: | mir-2278 |
| Gene Description: | microRNA 2278 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GGCCTTATAAAC,-,0.00),-33(CCTTATAAACAG,+,0.00)" |