TSS: Rfhg 79537.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000641660.1, intron 1 of 1) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3827364,EH38E2456270) |chr=chr6 |cpg_percent=0....") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NR_134611, intron 1 of 1) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3827364,EH38E2456270) | |ccre_description=dELS,CTCF-bound (EH38D3827364,EH38E2456270) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NR_134611, intron 1 of 1) | ||
|distance=2 | |distance=2 | ||
|distance_to_tss=2615 | |distance_to_tss=2615 | ||
|end=26571940 | |end=26571940 | ||
|entrez_id= | |entrez_id=105374988 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC105374988 | ||
|gene_id=100009603 | |gene_id=100009603 | ||
|gene_name= | |gene_name=LOC105374988 | ||
|gene_source=HGNC:33253 | |gene_source=HGNC:33253 | ||
|gene_symbol=TRA-AGC11-1 | |gene_symbol=TRA-AGC11-1 | ||
|gene_synonyms=tRNA-Ala-AGC-11-1 | |gene_synonyms=tRNA-Ala-AGC-11-1 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:33253 | |hgnc_mgi_id=HGNC:33253 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000284607 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_134611 | ||
|nearest_refseq= | |nearest_refseq=NR_134611 | ||
|nearest_unigene= | |nearest_unigene=Hs.551772 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=26571938 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 00:37, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3827364,EH38E2456270) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 2615 |
|---|---|
| Nearest PromoterID: | NR_134611 |
| Entrez ID: | 105374988 |
| Nearest Unigene: | Hs.551772 |
| Nearest Refseq: | NR_134611 |
| Nearest Ensembl: | ENSG00000284607 |
| Gene Name: | LOC105374988 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105374988 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.