TSS: Rfhg 82728.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000614467.4, intron 3 of 14) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D3842914,EH38E2467996) |chr=chr6 |cpg_percent=0...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=promoter-TSS (NR_134654) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3842914,EH38E2467996) | |ccre_description=pELS,CTCF-bound (EH38D3842914,EH38E2467996) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.052632 | |cpg_percent=0.052632 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_134654) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-160 | ||
|end=42783346 | |end=42783346 | ||
|entrez_id= | |entrez_id=401261 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC401261 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LOC401261 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_134654 | ||
|nearest_refseq= | |nearest_refseq=NM_001004322 | ||
|nearest_unigene= | |nearest_unigene=Hs.656652 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=42783327 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 01:33, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3842914,EH38E2467996) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -160 |
|---|---|
| Nearest PromoterID: | NR_134654 |
| Entrez ID: | 401261 |
| Nearest Unigene: | Hs.656652 |
| Nearest Refseq: | NM_001004322 |
| Nearest Ensembl: | |
| Gene Name: | LOC401261 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.052632 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |