TSS: Rfhg 100771.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000393054.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4037897,EH38E2595186) |chr=chr7 |cpg_percent=0.038462 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_130841) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4037897,EH38E2595186) | |ccre_description=PLS,CTCF-bound (EH38D4037897,EH38E2595186) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.038462 | |cpg_percent=0.038462 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_130841) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=93 | |distance_to_tss=93 | ||
|end=138773970 | |end=138773970 | ||
|entrez_id= | |entrez_id=50617 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.641509 | |gc_percent=0.641509 | ||
|gene_alias= | |gene_alias=A4{{!}}ATP6N1B{{!}}ATP6N2{{!}}RDRTA2{{!}}RTA1C{{!}}RTADR{{!}}STV1{{!}}VPH1{{!}}VPP2 | ||
|gene_description= | |gene_description=ATPase H+ transporting V0 subunit a4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=ATP6V0A4 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000105929 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_130841 | ||
|nearest_refseq= | |nearest_refseq=NM_020632 | ||
|nearest_unigene= | |nearest_unigene=Hs.98967 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=138773918 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:19, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4037897,EH38E2595186) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_130841 |
| Entrez ID: | 50617 |
| Nearest Unigene: | Hs.98967 |
| Nearest Refseq: | NM_020632 |
| Nearest Ensembl: | ENSG00000105929 |
| Gene Name: | ATP6V0A4 |
| Gene Alias: | A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 |
| Gene Type: | protein-coding |
| CpG%: | 0.038462 |
| GC%: | 0.641509 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |