TSS: Rfhg 101425.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000390412.1)
|annotation=intron (NM_001130026, intron 10 of 10)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D4041351,EH38E2597732)
|ccre_description=PLS,CTCF-bound (EH38D4041351,EH38E2597732)
|chr=chr7
|chr=chr7
|cpg_percent=0.017241
|cpg_percent=0.017241
|detailed_annotation=TR_J_gene-promoter-TSS (ENST00000390412.1)
|detailed_annotation=intron (NM_001130026, intron 10 of 10)
|distance=0
|distance=0
|distance_to_tss=-3
|distance_to_tss=25392
|end=142796391
|end=142796391
|entrez_id=ENSG00000211764
|entrez_id=5645
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.576271
|gc_percent=0.576271
|gene_alias=
|gene_alias=TRY2{{!}}TRY8{{!}}TRYP2
|gene_description=
|gene_description=serine protease 2
|gene_id=28566
|gene_id=28566
|gene_name=T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
|gene_name=PRSS2
|gene_source=HGNC:12168 HGNC:12198
|gene_source=HGNC:12168 HGNC:12198
|gene_symbol=TRBJ2-1 TRBV21-1
|gene_symbol=TRBJ2-1 TRBV21-1
|gene_synonyms=TCRBJ2S1 TCRBV10S1P TCRBV21S1 TRBJ21 TRBV211
|gene_synonyms=TCRBJ2S1 TCRBV10S1P TCRBV21S1 TRBJ21 TRBV211
|gene_type=TR_J_gene
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:12168 HGNC:12198
|hgnc_mgi_id=HGNC:12168 HGNC:12198
|nearest_ensembl=
|nearest_ensembl=ENSG00000275896
|nearest_promoter_id=ENST00000390412.1
|nearest_promoter_id=NM_002770
|nearest_refseq=
|nearest_refseq=NM_002770
|nearest_unigene=ENST00000390412
|nearest_unigene=Hs.449281
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=142796332
|start=142796333
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 16:28, 22 June 2023

Basic information about the TSS

TSS ID:rfhg_101425.1
Species:human
Chr:chr7
Start:142796333
End:142796391
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4041351,EH38E2597732)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390412.1:0
AF088323:0
GeneID:28566
HGNC/MGI_ID:HGNC:12168 HGNC:12198
UniProt_ID:A0A0A0MTA7
Nearer transcript ids and distances:
    Gene_name:PRSS2
    Gene_symbol:TRBJ2-1 TRBV21-1
    Gene_synonyms:TCRBJ2S1 TCRBV10S1P TCRBV21S1 TRBJ21 TRBV211
    Gene_source:HGNC:12168 HGNC:12198



    TATA-Box annotation

    Distance to TSS:25392
    Nearest PromoterID:NM_002770
    Entrez ID:5645
    Nearest Unigene:Hs.449281
    Nearest Refseq:NM_002770
    Nearest Ensembl:ENSG00000275896
    Gene Name:PRSS2
    Gene Alias:TRY2|TRY8|TRYP2
    Gene Type:protein-coding
    CpG%:0.017241
    GC%:0.576271
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_101425.1&oldid=2330488"