TSS: Rfhg 109192.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000522369.5, intron 1 of 2) |ccre_category=dELS |ccre_description=dELS (EH38D4126014,EH38E2651860) |chr=chr8 |cpg_percent=0.062500 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_001280539, intron 1 of 10) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D4126014,EH38E2651860) | |ccre_description=dELS (EH38D4126014,EH38E2651860) | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.062500 | |cpg_percent=0.062500 | ||
|detailed_annotation= | |detailed_annotation=L2b{{!}}LINE{{!}}L2 | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-3480 | ||
|end=100313441 | |end=100313441 | ||
|entrez_id= | |entrez_id=25897 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.588235 | |gc_percent=0.588235 | ||
|gene_alias= | |gene_alias=RNF19 | ||
|gene_description= | |gene_description=ring finger protein 19A, RBR E3 ubiquitin protein ligase | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=RNF19A | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000034677 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_183419 | ||
|nearest_refseq= | |nearest_refseq=NM_015435 | ||
|nearest_unigene= | |nearest_unigene=Hs.292882 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=100313425 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 18:42, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D4126014,EH38E2651860) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3480 |
|---|---|
| Nearest PromoterID: | NM_183419 |
| Entrez ID: | 25897 |
| Nearest Unigene: | Hs.292882 |
| Nearest Refseq: | NM_015435 |
| Nearest Ensembl: | ENSG00000034677 |
| Gene Name: | RNF19A |
| Gene Alias: | RNF19 |
| Gene Type: | protein-coding |
| CpG%: | 0.062500 |
| GC%: | 0.588235 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |