TSS: Rfhg 114623.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000259631.4) |ccre_category=PLS |ccre_description=PLS (EH38D4187240,EH38E2691374) |chr=chr9 |cpg_percent=0.000000 |detailed_annot...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_006664) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D4187240,EH38E2691374) | |ccre_description=PLS (EH38D4187240,EH38E2691374) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_006664) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=0 | ||
|end=34662659 | |end=34662659 | ||
|entrez_id= | |entrez_id=10850 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.400000 | |gc_percent=0.400000 | ||
|gene_alias= | |gene_alias=ALP{{!}}CTACK{{!}}CTAK{{!}}ESKINE{{!}}ILC{{!}}PESKY{{!}}SCYA27 | ||
|gene_description= | |gene_description=C-C motif chemokine ligand 27 | ||
|gene_id=10850 | |gene_id=10850 | ||
|gene_name= | |gene_name=CCL27 | ||
|gene_source=HGNC:10626 | |gene_source=HGNC:10626 | ||
|gene_symbol=CCL27 | |gene_symbol=CCL27 | ||
|gene_synonyms=ALP CTACK CTAK ESkine ILC PESKY skinkine | |gene_synonyms=ALP CTACK CTAK ESkine ILC PESKY skinkine | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10626 | |hgnc_mgi_id=HGNC:10626 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000213927 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_006664 | ||
|nearest_refseq= | |nearest_refseq=NM_006664 | ||
|nearest_unigene= | |nearest_unigene=Hs.648124 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=34662655 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:16, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4187240,EH38E2691374) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_006664 |
| Entrez ID: | 10850 |
| Nearest Unigene: | Hs.648124 |
| Nearest Refseq: | NM_006664 |
| Nearest Ensembl: | ENSG00000213927 |
| Gene Name: | CCL27 |
| Gene Alias: | ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27 |
| Gene Description: | C-C motif chemokine ligand 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.