TSS: Rfhg 114674.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000312292.5) |ccre_category=pELS |ccre_description=pELS (EH38D4187500,EH38E2691548) |chr=chr9 |cpg_percent=0.000000 |detailed_ann...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_203299) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D4187500,EH38E2691548) | |ccre_description=pELS (EH38D4187500,EH38E2691548) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_203299) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=7 | ||
|end=35042269 | |end=35042269 | ||
|entrez_id= | |entrez_id=138724 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.522727 | |gc_percent=0.522727 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=chromosome 9 open reading frame 131 | ||
|gene_id=138724 | |gene_id=138724 | ||
|gene_name= | |gene_name=C9orf131 | ||
|gene_source=HGNC:31418 | |gene_source=HGNC:31418 | ||
|gene_symbol=C9orf131 | |gene_symbol=C9orf131 | ||
|gene_synonyms=MGC41945 | |gene_synonyms=MGC41945 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31418 | |hgnc_mgi_id=HGNC:31418 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000174038 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001040410 | ||
|nearest_refseq= | |nearest_refseq=NM_203299 | ||
|nearest_unigene= | |nearest_unigene=Hs.148250 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=35042226 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 20:17, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D4187500,EH38E2691548) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_001040410 |
| Entrez ID: | 138724 |
| Nearest Unigene: | Hs.148250 |
| Nearest Refseq: | NM_203299 |
| Nearest Ensembl: | ENSG00000174038 |
| Gene Name: | C9orf131 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.522727 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.