TSS: Rfhg 114781.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_174923) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4188016,EH38E2691927) | |ccre_description=PLS,CTCF-bound (EH38D4188016,EH38E2691927) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.056452 | |cpg_percent=0.056452 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_174923) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=48 | ||
|end=35658032 | |end=35658032 | ||
|entrez_id= | |entrez_id=6023 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=CHH{{!}}NME1{{!}}RMRPR{{!}}RRP2 | ||
|gene_description= | |gene_description=RNA component of mitochondrial RNA processing endoribonuclease | ||
|gene_id=6023 | |gene_id=6023 | ||
|gene_name= | |gene_name=RMRP | ||
|gene_source=HGNC:10031 | |gene_source=HGNC:10031 | ||
|gene_symbol=RMRP | |gene_symbol=RMRP | ||
|gene_synonyms=NME1 RMRPR RRP2 | |gene_synonyms=NME1 RMRPR RRP2 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:10031 | |hgnc_mgi_id=HGNC:10031 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000269900 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_003051 | ||
|nearest_refseq= | |nearest_refseq=NR_003051 | ||
|nearest_unigene= | |nearest_unigene=Hs.587502 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=35657908 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:19, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4188016,EH38E2691927) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NR_003051 |
| Entrez ID: | 6023 |
| Nearest Unigene: | Hs.587502 |
| Nearest Refseq: | NR_003051 |
| Nearest Ensembl: | ENSG00000269900 |
| Gene Name: | RMRP |
| Gene Alias: | CHH|NME1|RMRPR|RRP2 |
| Gene Description: | RNA component of mitochondrial RNA processing endoribonuclease |
| Gene Type: | ncRNA |
| CpG%: | 0.056452 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.