TSS: Rfhg 115943.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001282760) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D4200661,EH38E2700255) | |ccre_description=pELS (EH38D4200661,EH38E2700255) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.142857 | |cpg_percent=0.142857 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001282760) | ||
|distance= | |distance= | ||
|distance_to_tss=-999 | |distance_to_tss=-999 | ||
|end=79570778 | |end=79570778 | ||
|entrez_id= | |entrez_id=7091 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.625000 | |gc_percent=0.625000 | ||
|gene_alias= | |gene_alias=BCE-1{{!}}BCE1{{!}}E(spI){{!}}E(spl){{!}}ESG{{!}}ESG4{{!}}GRG4{{!}}Grg-4 | ||
|gene_description= | |gene_description=TLE family member 4, transcriptional corepressor | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TLE4 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000106829 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001351542 | ||
|nearest_refseq= | |nearest_refseq=NM_007005 | ||
|nearest_unigene= | |nearest_unigene=Hs.444213 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=79570771 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 20:37, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D4200661,EH38E2700255) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -999 |
|---|---|
| Nearest PromoterID: | NM_001351542 |
| Entrez ID: | 7091 |
| Nearest Unigene: | Hs.444213 |
| Nearest Refseq: | NM_007005 |
| Nearest Ensembl: | ENSG00000106829 |
| Gene Name: | TLE4 |
| Gene Alias: | BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 |
| Gene Type: | protein-coding |
| CpG%: | 0.142857 |
| GC%: | 0.625000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |