TSS: Rfhg 117365.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000223641.4) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4217958,EH38E2712257) |chr=chr9 |cpg_percent=0.101124 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_033087) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4217958,EH38E2712257) | |ccre_description=PLS,CTCF-bound (EH38D4217958,EH38E2712257) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.101124 | |cpg_percent=0.101124 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_033087) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
|end=99221992 | |end=99221992 | ||
|entrez_id= | |entrez_id=85365 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.722222 | |gc_percent=0.722222 | ||
|gene_alias= | |gene_alias=CDG1I{{!}}CDGIi{{!}}CMS14{{!}}CMSTA3{{!}}NET38{{!}}hALPG2 | ||
|gene_description= | |gene_description=ALG2 alpha-1,3/1,6-mannosyltransferase | ||
|gene_id=85365 | |gene_id=85365 | ||
|gene_name=ALG2 | |gene_name=ALG2 | ||
|gene_source=HGNC:23159 | |gene_source=HGNC:23159 | ||
|gene_symbol=ALG2 | |gene_symbol=ALG2 | ||
|gene_synonyms=CDG1I CDGIi FLJ14511 NET38 hALPG2 | |gene_synonyms=CDG1I CDGIi FLJ14511 NET38 hALPG2 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23159 | |hgnc_mgi_id=HGNC:23159 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000119523 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_033087 | ||
|nearest_refseq= | |nearest_refseq=NM_033087 | ||
|nearest_unigene= | |nearest_unigene=Hs.40919 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=99221903 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:02, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4217958,EH38E2712257) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_033087 |
| Entrez ID: | 85365 |
| Nearest Unigene: | Hs.40919 |
| Nearest Refseq: | NM_033087 |
| Nearest Ensembl: | ENSG00000119523 |
| Gene Name: | ALG2 |
| Gene Alias: | CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 |
| Gene Description: | ALG2 alpha-1,3/1,6-mannosyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.101124 |
| GC%: | 0.722222 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.