TSS: Rfhg 117442.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000262455.6) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4218692,EH38E2712723) |chr=chr9 |cpg_percent=0.072464 |det...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_015051) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4218692,EH38E2712723) | |ccre_description=PLS,CTCF-bound (EH38D4218692,EH38E2712723) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.072464 | |cpg_percent=0.072464 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_015051) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-6 | ||
|end=100099041 | |end=100099041 | ||
|entrez_id= | |entrez_id=23071 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.657143 | |gc_percent=0.657143 | ||
|gene_alias= | |gene_alias=PDIA10{{!}}TXNDC4 | ||
|gene_description= | |gene_description=endoplasmic reticulum protein 44 | ||
|gene_id=23071 | |gene_id=23071 | ||
|gene_name= | |gene_name=ERP44 | ||
|gene_source=HGNC:18311 | |gene_source=HGNC:18311 | ||
|gene_symbol=ERP44 | |gene_symbol=ERP44 | ||
|gene_synonyms=KIAA0573 PDIA10 | |gene_synonyms=KIAA0573 PDIA10 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:18311 | |hgnc_mgi_id=HGNC:18311 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000023318 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_015051 | ||
|nearest_refseq= | |nearest_refseq=NM_015051 | ||
|nearest_unigene= | |nearest_unigene=Hs.154023 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=100098972 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:03, 22 June 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4218692,EH38E2712723) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_015051 |
| Entrez ID: | 23071 |
| Nearest Unigene: | Hs.154023 |
| Nearest Refseq: | NM_015051 |
| Nearest Ensembl: | ENSG00000023318 |
| Gene Name: | ERP44 |
| Gene Alias: | PDIA10|TXNDC4 |
| Gene Description: | endoplasmic reticulum protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.072464 |
| GC%: | 0.657143 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.