TSS: Rfhg 122427.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000644262.1, intron 1 of 1) |ccre_category=dELS |ccre_description=dELS (EH38D2309686,EH38E1444938) |chr=chr10 |cpg_percent=0.000000 |de...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_000417, intron 1 of 7) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D2309686,EH38E1444938) | |ccre_description=dELS (EH38D2309686,EH38E1444938) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_000417, intron 1 of 7) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=16760 | ||
|end=6045629 | |end=6045629 | ||
|entrez_id= | |entrez_id=3559 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.355556 | |gc_percent=0.355556 | ||
|gene_alias= | |gene_alias=CD25{{!}}IDDM10{{!}}IL2R{{!}}IMD41{{!}}TCGFR{{!}}p55 | ||
|gene_description= | |gene_description=interleukin 2 receptor subunit alpha | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=IL2RA | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000134460 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001308243 | ||
|nearest_refseq= | |nearest_refseq=NM_000417 | ||
|nearest_unigene= | |nearest_unigene=Hs.231367 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=6045585 | ||
|strand=+ | |strand=+ | ||
|tata_box=0(AGATTTAAAAGG,-,0.00) | |tata_box=0(AGATTTAAAAGG,-,0.00) | ||
Revision as of 22:29, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2309686,EH38E1444938) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 16760 |
|---|---|
| Nearest PromoterID: | NM_001308243 |
| Entrez ID: | 3559 |
| Nearest Unigene: | Hs.231367 |
| Nearest Refseq: | NM_000417 |
| Nearest Ensembl: | ENSG00000134460 |
| Gene Name: | IL2RA |
| Gene Alias: | CD25|IDDM10|IL2R|IMD41|TCGFR|p55 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.355556 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | 0(AGATTTAAAAGG,-,0.00) |