TSS: Rfhg 127008.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_003373) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.121212 | |cpg_percent=0.121212 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_003373) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=100 | |distance_to_tss=100 | ||
|end=73998348 | |end=73998348 | ||
|entrez_id= | |entrez_id=7414 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.667925 | |gc_percent=0.667925 | ||
|gene_alias= | |gene_alias=CMD1W{{!}}CMH15{{!}}HEL114{{!}}MV{{!}}MVCL | ||
|gene_description= | |gene_description=vinculin | ||
|gene_id=7414 | |gene_id=7414 | ||
|gene_name= | |gene_name=VCL | ||
|gene_source=HGNC:12665 | |gene_source=HGNC:12665 | ||
|gene_symbol=VCL | |gene_symbol=VCL | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12665 | |hgnc_mgi_id=HGNC:12665 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000035403 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_003373 | ||
|nearest_refseq= | |nearest_refseq=NM_003373 | ||
|nearest_unigene= | |nearest_unigene=Hs.643896 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=73998084 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 23:46, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 100 |
|---|---|
| Nearest PromoterID: | NM_003373 |
| Entrez ID: | 7414 |
| Nearest Unigene: | Hs.643896 |
| Nearest Refseq: | NM_003373 |
| Nearest Ensembl: | ENSG00000035403 |
| Gene Name: | VCL |
| Gene Alias: | CMD1W|CMH15|HEL114|MV|MVCL |
| Gene Type: | protein-coding |
| CpG%: | 0.121212 |
| GC%: | 0.667925 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.