TSS: Rfhg 131282.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D2403064,EH38E1507514) |chr=chr10 |cpg_percent=0.200000 |detailed_annotation=In...") |
No edit summary |
||
| Line 5: | Line 5: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.200000 | |cpg_percent=0.200000 | ||
|detailed_annotation= | |detailed_annotation=MIRb{{!}}SINE{{!}}MIR | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=128559 | ||
|end=124290369 | |end=124290369 | ||
|entrez_id= | |entrez_id=4942 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.636364 | |gc_percent=0.636364 | ||
|gene_alias= | |gene_alias=GACR{{!}}HOGA{{!}}OATASE{{!}}OKT | ||
|gene_description= | |gene_description=ornithine aminotransferase | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=OAT | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000065154 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001322965 | ||
|nearest_refseq= | |nearest_refseq=NM_000274 | ||
|nearest_unigene= | |nearest_unigene=Hs.523332 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=124290359 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 01:00, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2403064,EH38E1507514) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 128559 |
|---|---|
| Nearest PromoterID: | NM_001322965 |
| Entrez ID: | 4942 |
| Nearest Unigene: | Hs.523332 |
| Nearest Refseq: | NM_000274 |
| Nearest Ensembl: | ENSG00000065154 |
| Gene Name: | OAT |
| Gene Alias: | GACR|HOGA|OATASE|OKT |
| Gene Type: | protein-coding |
| CpG%: | 0.200000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |