TSS: Rfhg 132047.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_138329, intron 3 of 7) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2412408,EH38E1513322) | |ccre_description=pELS,CTCF-bound (EH38D2412408,EH38E1513322) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=CpG-3720 | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=1512 | ||
|end=280085 | |end=280085 | ||
|entrez_id= | |entrez_id=171389 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=AVR{{!}}CLR11.4{{!}}NALP6{{!}}NAVR{{!}}NAVR/AVR{{!}}PAN3{{!}}PYPAF5 | ||
|gene_description= | |gene_description=NLR family pyrin domain containing 6 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=NLRP6 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000174885 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_138329 | ||
|nearest_refseq= | |nearest_refseq=NM_138329 | ||
|nearest_unigene= | |nearest_unigene=Hs.352611 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=280080 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 01:12, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2412408,EH38E1513322) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1512 |
|---|---|
| Nearest PromoterID: | NM_138329 |
| Entrez ID: | 171389 |
| Nearest Unigene: | Hs.352611 |
| Nearest Refseq: | NM_138329 |
| Nearest Ensembl: | ENSG00000174885 |
| Gene Name: | NLRP6 |
| Gene Alias: | AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |