TSS: Rfhg 13208.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001278189) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2224274,EH38E1385954) | |ccre_description=PLS,CTCF-bound (EH38D2224274,EH38E1385954) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.040000 | |cpg_percent=0.040000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001278189) | ||
|distance= | |distance= | ||
|distance_to_tss=-51 | |distance_to_tss=-51 | ||
|end=154183313 | |end=154183313 | ||
|entrez_id= | |entrez_id=7170 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.653846 | |gc_percent=0.653846 | ||
|gene_alias= | |gene_alias=CAPM1{{!}}CFTD{{!}}HEL-189{{!}}HEL-S-82p{{!}}NEM1{{!}}OK/SW-cl.5{{!}}TM-5{{!}}TM3{{!}}TM30{{!}}TM30nm{{!}}TM5{{!}}TPM3nu{{!}}TPMsk3{{!}}TRK{{!}}hscp30 | ||
|gene_description= | |gene_description=tropomyosin 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TPM3 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000143549 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001278190 | ||
|nearest_refseq= | |nearest_refseq=NM_152263 | ||
|nearest_unigene= | |nearest_unigene=Hs.535581 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=154183288 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 01:13, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2224274,EH38E1385954) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -51 |
|---|---|
| Nearest PromoterID: | NM_001278190 |
| Entrez ID: | 7170 |
| Nearest Unigene: | Hs.535581 |
| Nearest Refseq: | NM_152263 |
| Nearest Ensembl: | ENSG00000143549 |
| Gene Name: | TPM3 |
| Gene Alias: | CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30 |
| Gene Type: | protein-coding |
| CpG%: | 0.040000 |
| GC%: | 0.653846 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |