TSS: Rfhg 13659.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000314835.5) |ccre_category=N |ccre_description=N |chr=chr1 |cpg_percent=0.000000 |detailed_annotation=unprocessed_pseudogene-pro...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_024117).2 | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_024117).2 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=49 | ||
|end=155745818 | |end=155745818 | ||
|entrez_id= | |entrez_id=100129405 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=MSTO2 | ||
|gene_description= | |gene_description=misato family member 2, pseudogene | ||
|gene_id=100129405 | |gene_id=100129405 | ||
|gene_name= | |gene_name=MSTO2P | ||
|gene_source=HGNC:26329 | |gene_source=HGNC:26329 | ||
|gene_symbol=MSTO2P | |gene_symbol=MSTO2P | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:26329 | |hgnc_mgi_id=HGNC:26329 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_024117 | ||
|nearest_refseq= | |nearest_refseq=NR_024117 | ||
|nearest_unigene= | |nearest_unigene=Hs.656361 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=155745816 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 02:36, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NR_024117 |
| Entrez ID: | 100129405 |
| Nearest Unigene: | Hs.656361 |
| Nearest Refseq: | NR_024117 |
| Nearest Ensembl: | |
| Gene Name: | MSTO2P |
| Gene Alias: | MSTO2 |
| Gene Description: | misato family member 2, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.