TSS: Rfhg 147974.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_018179) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2532527,EH38E1594811) | |ccre_description=PLS,CTCF-bound (EH38D2532527,EH38E1594811) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.222222 | |cpg_percent=0.222222 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_018179) | ||
|distance=191 | |distance=191 | ||
|distance_to_tss= | |distance_to_tss=21 | ||
|end=14365712 | |end=14365712 | ||
|entrez_id= | |entrez_id=55729 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.894737 | |gc_percent=0.894737 | ||
|gene_alias= | |gene_alias=AM{{!}}ATF-IP{{!}}MCAF{{!}}MCAF1{{!}}p621 | ||
|gene_description= | |gene_description=activating transcription factor 7 interacting protein | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=ATF7IP | ||
|gene_source=HGNC:36260 | |gene_source=HGNC:36260 | ||
|gene_symbol=RPL30P11 | |gene_symbol=RPL30P11 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:36260 | |hgnc_mgi_id=HGNC:36260 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000171681 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001286514 | ||
|nearest_refseq= | |nearest_refseq=NM_018179 | ||
|nearest_unigene= | |nearest_unigene=Hs.504856 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=14365694 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 06:00, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2532527,EH38E1594811) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001286514 |
| Entrez ID: | 55729 |
| Nearest Unigene: | Hs.504856 |
| Nearest Refseq: | NM_018179 |
| Nearest Ensembl: | ENSG00000171681 |
| Gene Name: | ATF7IP |
| Gene Alias: | AM|ATF-IP|MCAF|MCAF1|p621 |
| Gene Type: | protein-coding |
| CpG%: | 0.222222 |
| GC%: | 0.894737 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.