TSS: Rfhg 152026.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000338146.6)
|annotation=promoter-TSS (NM_207344)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2563754,EH38E1615757)
|ccre_description=PLS,CTCF-bound (EH38D2563754,EH38E1615757)
|chr=chr12
|chr=chr12
|cpg_percent=0.078431
|cpg_percent=0.078431
|detailed_annotation=protein_coding-promoter-TSS (ENST00000338146.6)
|detailed_annotation=promoter-TSS (NM_207344)
|distance=0
|distance=0
|distance_to_tss=-5
|distance_to_tss=-16
|end=56468588
|end=56468588
|entrez_id=ENSG00000176422
|entrez_id=283377
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.653846
|gc_percent=0.653846
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=SPRY domain containing 4
|gene_id=283377
|gene_id=283377
|gene_name=SPRY domain containing 4
|gene_name=SPRYD4
|gene_source=HGNC:27468
|gene_source=HGNC:27468
|gene_symbol=SPRYD4
|gene_symbol=SPRYD4
|gene_synonyms=DKFZp686N0877
|gene_synonyms=DKFZp686N0877
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:27468
|hgnc_mgi_id=HGNC:27468
|nearest_ensembl=
|nearest_ensembl=ENSG00000176422
|nearest_promoter_id=ENST00000338146.6
|nearest_promoter_id=NM_207344
|nearest_refseq=
|nearest_refseq=NM_207344
|nearest_unigene=ENST00000338146
|nearest_unigene=Hs.128676
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=56468536
|start=56468537
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 07:13, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_152026.1
TSS ID(Version3):hg_126113.1
hg_126114.1
Species:human
Chr:chr12
Start:56468537
End:56468588
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2563754,EH38E1615757)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000338146.7:0
AK300594:0
AF451989:0
AL832247:0
BC020844:0
AK291920:0
BX647957:0
GeneID:283377
HGNC/MGI_ID:HGNC:27468
UniProt_ID:B4DUC9 Q8WW59
Nearer transcript ids and distances:
    Gene_name:SPRYD4
    Gene_symbol:SPRYD4
    Gene_synonyms:DKFZp686N0877
    Gene_source:HGNC:27468



    TATA-Box annotation

    Distance to TSS:-16
    Nearest PromoterID:NM_207344
    Entrez ID:283377
    Nearest Unigene:Hs.128676
    Nearest Refseq:NM_207344
    Nearest Ensembl:ENSG00000176422
    Gene Name:SPRYD4
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.078431
    GC%:0.653846
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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