TSS: Rfhg 169858.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000539359.1) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2755774,EH38E1739677) |chr=chr14 |cpg_percent=0.058824 |de...")
 
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000539359.1)
|annotation=promoter-TSS (NM_000623)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2755774,EH38E1739677)
|ccre_description=PLS,CTCF-bound (EH38D2755774,EH38E1739677)
|chr=chr14
|chr=chr14
|cpg_percent=0.058824
|cpg_percent=0.058824
|detailed_annotation=protein_coding-promoter-TSS (ENST00000539359.1)
|detailed_annotation=promoter-TSS (NM_000623)
|distance=0
|distance=0
|distance_to_tss=22
|distance_to_tss=68
|end=96204917
|end=96204917
|entrez_id=ENSG00000258691
|entrez_id=624
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.679612
|gc_percent=0.679612
|gene_alias=
|gene_alias=B2R{{!}}BK-2{{!}}BK2{{!}}BKR2{{!}}BRB2
|gene_description=
|gene_description=bradykinin receptor B2
|gene_id=623 624
|gene_id=623 624
|gene_name=bradykinin receptor B1; bradykinin receptor B2
|gene_name=BDKRB2
|gene_source=HGNC:1029 HGNC:1030
|gene_source=HGNC:1029 HGNC:1030
|gene_symbol=BDKRB1 BDKRB2
|gene_symbol=BDKRB1 BDKRB2
|gene_synonyms=B1BKR BK-2 BKR1 bradyb1
|gene_synonyms=B1BKR BK-2 BKR1 bradyb1
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:1029 HGNC:1030
|hgnc_mgi_id=HGNC:1029 HGNC:1030
|nearest_ensembl=
|nearest_ensembl=ENSG00000168398
|nearest_promoter_id=ENST00000553811.1
|nearest_promoter_id=NM_000623
|nearest_refseq=
|nearest_refseq=NM_000623
|nearest_unigene=ENST00000553811
|nearest_unigene=Hs.654542
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=96204814
|start=96204815
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 12:22, 23 June 2023

Basic information about the TSS

TSS ID:rfhg_169858.1
TSS ID(Version3):hg_141333.1
hg_141332.1
Species:human
Chr:chr14
Start:96204815
End:96204917
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2755774,EH38E1739677)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000539359.1:0
ENST00000554311.2:0
AK311049:0
AK299316:0
KJ950627:0
KJ950628:0
M88714:0
GeneID:623 624
HGNC/MGI_ID:HGNC:1029 HGNC:1030
UniProt_ID:B4DRL4 P30411
Nearer transcript ids and distances:
    Gene_name:BDKRB2
    Gene_symbol:BDKRB1 BDKRB2
    Gene_synonyms:B1BKR BK-2 BKR1 bradyb1
    Gene_source:HGNC:1029 HGNC:1030



    TATA-Box annotation

    Distance to TSS:68
    Nearest PromoterID:NM_000623
    Entrez ID:624
    Nearest Unigene:Hs.654542
    Nearest Refseq:NM_000623
    Nearest Ensembl:ENSG00000168398
    Gene Name:BDKRB2
    Gene Alias:B2R|BK-2|BK2|BKR2|BRB2
    Gene Type:protein-coding
    CpG%:0.058824
    GC%:0.679612
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_169858.1&oldid=2406522"