TSS: Rfhg 171984.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_135833).3 | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2773038,EH38E1751284) | |ccre_description=PLS,CTCF-bound (EH38D2773038,EH38E1751284) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.048387 | |cpg_percent=0.048387 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_135833).3 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-1 | ||
|end=32615534 | |end=32615534 | ||
|entrez_id= | |entrez_id=9824 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=GAP (1-12) | ||
|gene_description= | |gene_description=Rho GTPase activating protein 11A | ||
|gene_id=9824 | |gene_id=9824 | ||
|gene_name= | |gene_name=ARHGAP11A | ||
|gene_source=HGNC:15783 | |gene_source=HGNC:15783 | ||
|gene_symbol=ARHGAP11A | |gene_symbol=ARHGAP11A | ||
|gene_synonyms=KIAA0013 | |gene_synonyms=KIAA0013 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:15783 | |hgnc_mgi_id=HGNC:15783 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000198826 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001286480 | ||
|nearest_refseq= | |nearest_refseq=NM_014783 | ||
|nearest_unigene= | |nearest_unigene=Hs.591130 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=32615472 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 12:57, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2773038,EH38E1751284) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001286480 |
| Entrez ID: | 9824 |
| Nearest Unigene: | Hs.591130 |
| Nearest Refseq: | NM_014783 |
| Nearest Ensembl: | ENSG00000198826 |
| Gene Name: | ARHGAP11A |
| Gene Alias: | GAP (1-12) |
| Gene Type: | protein-coding |
| CpG%: | 0.048387 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.