TSS: Hg 101638.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=-81 |entrez_id=2304 |gc_percent=0.771144 |gene_alias=FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 |gene_description=forkhead...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|FOXE2= | |||
|HFKH4= | |||
|HFKL5= | |||
|NMTC4= | |||
|TITF2= | |||
|TTF-2= | |||
|TTF2= | |||
|chr=chr9 | |||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance= | |||
|distance_to_tss=-81 | |distance_to_tss=-81 | ||
|end=97853175 | |||
|entrez_id=2304 | |entrez_id=2304 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| Line 12: | Line 22: | ||
|nearest_refseq=NM_004473 | |nearest_refseq=NM_004473 | ||
|nearest_unigene=Hs.159234 | |nearest_unigene=Hs.159234 | ||
|num_trans=0 | |||
|species=human | |||
|start=97853172 | |||
|strand=- | |||
|tata_box="-32(CTCCTTAAAGGG,-,0.00),-30(CCTTAAAGGGGC,+,0.00)" | |tata_box="-32(CTCCTTAAAGGG,-,0.00),-30(CCTTAAAGGGGC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_101638.1 | |tss_id=hg_101638.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:52, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -81 |
|---|---|
| Nearest PromoterID: | NM_004473 |
| Entrez ID: | 2304 |
| Nearest Unigene: | Hs.159234 |
| Nearest Refseq: | NM_004473 |
| Nearest Ensembl: | ENSG00000178919 |
| Gene Name: | FOXE1 |
| Gene Alias: | FKHL15 |
| Gene Description: | forkhead box E1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CTCCTTAAAGGG,-,0.00),-30(CCTTAAAGGGGC,+,0.00)" |